PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g050470.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 2668aa    MW: 298347 Da    PI: 6.615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g050470.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00125502575123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                      ykC    C++sFs+  +L  H r+ +
  Csa09g050470.2 2550 YKCDmeGCTMSFSTEKQLALHKRNiC 2575
                      99********************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005457.4E-171960IPR003349JmjN domain
PROSITE profilePS5118313.8132061IPR003349JmjN domain
PfamPF023751.2E-132154IPR003349JmjN domain
SMARTSM005582.6E-50200420IPR003347JmjC domain
PROSITE profilePS5118435.203203420IPR003347JmjC domain
SuperFamilySSF511972.11E-11215287No hitNo description
PfamPF023731.9E-15233284IPR003347JmjC domain
PfamPF023732.0E-29300402IPR003347JmjC domain
SuperFamilySSF511974.39E-17302438No hitNo description
SMARTSM003558.513321354IPR015880Zinc finger, C2H2-like
SMARTSM005585.0E-4713991587IPR003347JmjC domain
PROSITE profilePS5118432.49914021587IPR003347JmjC domain
SuperFamilySSF511974.39E-2514151604No hitNo description
PfamPF023739.3E-3414321570IPR003347JmjC domain
SMARTSM003558.925502572IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.88425732602IPR007087Zinc finger, C2H2
SMARTSM003550.1125732597IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.4E-425742596IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028025752597IPR007087Zinc finger, C2H2
SuperFamilySSF576673.44E-1025892631No hitNo description
Gene3DG3DSA:3.30.160.606.0E-1125972624IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9926032632IPR007087Zinc finger, C2H2
SMARTSM003550.002626032627IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028026052627IPR007087Zinc finger, C2H2
SuperFamilySSF576672.48E-726212655No hitNo description
Gene3DG3DSA:3.30.160.601.8E-826252656IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.15926332664IPR007087Zinc finger, C2H2
SMARTSM003551.126332659IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028026352659IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2668 aa     Download sequence    Send to blast
MAVSEQSQDV FPWLKSLPVA PEFRPTLAEF QDPIAYIFKI EEEASKYGIC KILPPLPPPS  60
KKASISNLNR SLAARAAGKV RDGGFGACDY DGGPTFATRQ QQIGFCPRKQ RPVQRPVWQS  120
GEEYSFGEFE FKAKTFEKNY LKKCGKKSQL SPLEMETLYW RATVDKPFSV EYANDMPGSA  180
FIPLSLAAAR RRESGGDAGT VGETAWNMRA MARAEGSLLK FMKEDIPGVT SPMVYIAMMF  240
SWFAWHVEDH DLHSLNYLHM GASKTWYGVP KEAAPAFEEV VRVHGYGGEL NPLGEYLVKD  300
HDLHSLNYLH MGASKTWYGV PKEAAPAFEE VVRVHGYGGE LNPLVTFSTL GEKTTVMSPE  360
VFVKAGIPCC RLVQNPGEFV VTFPGAYHSG FSHGFNFGEA SNIATPQWLT MAKDAAIRRA  420
AINYPPMVSH LQLLYDFALA LGSRVPTSIN AKPRSSRLKD KKRSEGERLT KKLFVENIIR  480
NNELLSSLGK GSPVALLPQS SSDISVCSDL RIGSDLTTNQ DNPIQLKSED FSSDSVMVGL  540
NNGLKDTVSV KEKFTSLCER NRNHLASREN ETQGTLPEAE RREKGGAVRL SDQRLFSCVT  600
CGVLSFDCVA IIQPKEAAAR YIMSADSSFF NDRTAVSESS NLGQAARSHH PQSMEKHDVD  660
YFSNVSVQTG HQRTSTTSQT NAQKDNGSLG LLVSAYGDSS DSEEEDNRGL DASTSEGERK  720
KYDQESAFKG SSFDTDENEV ARDGRTSDFN SHSLNGKQNN LSKGDNSSLL DITLPFVPRS  780
DDDPCRLHVF CLEHAAEVEQ QLRAIGGIHI MLLCHPGNSK TPRFHFYWSC DIALSIMQIL  840
ESVSSFERII IAEYRRIEAE AKIVAEELAI NHEWHDTEFR NVTREDEETI QAALDNVEAK  900
GGNSDWTVKL AINLSYSAIL SHSPLYSKQM PYNSVIYNVF GRSSPAISSL SKPEVSGKRF  960
SRQRKYVVGK WCGKVWMSHQ VHPFLLEEDL EGEEERSCHL RTAMDEDVTG KRLFPCTVSR  1020
DAATMFGRKY CRKRKVRAKA VPRKKLTSFK REDGVSDDTS EDHSYKQQWR ASGNEEESYF  1080
ETGHTASGDS SNQMSDQRKE IVRHKGYNVF ESDDEVADRS LGEEYSVREC AVSESSMDNG  1140
FQPYREKQSM YDRDDDDDDD MYKHPREIPR SKRTKVFRNP VSYDSEENGV YQQRGRVSRS  1200
SKQANRMGGE YDSAENSFEE LDFSSTGKRQ TRSTAKRKAK TKSVQSPRDA KGRTLQEFAS  1260
GMKTEELDSF MEGPSTRLRV RKPKPSRGSS ESKPKKIGKK RSSNASFARV ASEEDVQEDE  1320
EAENEEEECT GYQCDMEGCT MSFTSEKQLA LHKRNICPVR GCVDKPFSVE YANDMPGSAF  1380
IPLSLAAARR REYGGDGGTV GETAWNMRAM ARAEGSLLKF MNEEIPGVTS PMVYIAMMFS  1440
WFAWHVEDHD LHSLNYLHMG AGKTWYGVPK DAAVAFEEVV RVHGYGGELN PLGLCESGSL  1500
VSIHCLIVDI LVTSYTLGEK TTVMSPEVFV KAGIPCCRLV QNPGEFVVTF PRAYHSGFSH  1560
GFNCGEASNI ATPEWLRMAN DAAIRRAAIN YPPMVSHLQL LYDYALTLGS RVPASINTNP  1620
RSSRLKDKKR SEGERLTKKL FVEIIIRNNE LLSSLGKGSP VALLPQSSSD ISVCSDLRIG  1680
SDLRTNQEKP TLLKDEDLSC DSIMVSFNDG LKDTVSVKEK FTSLCERNRN HLASRENETQ  1740
ETLSDAERRE KGGAVRLSDQ RLFSCVTCGV LSFDCVAIVQ PKEAAARYIM SADSSFFNDW  1800
TAVSESANLG QDASAPVVKL SQSTEMHDAD YFYSVPVQTT DHSMKTSGQT TSAASLTKPH  1860
KEDCALGLLA SAYGDSSDSD EEDDIIVSEE KNYDQSGSCA YETQSFVTNG NEEARDGRSS  1920
YLNSQRLVCG KEKGVIEGSH ATSTCSTLSS PVEIALPFVP RSDDDSCRQR LVCGKEKGVI  1980
EGSHATSTCS TLSSPVEIAL PFVPRSDDDS CRLHVFCLEH AAEVEQRLRS IGGIHMMLLC  2040
HPEYPRIESE AKIVAEELAI NHNWNDTEFR NVAREDEETI QAALDYVEAK GGNSDWTVKL  2100
GINLSYSAIL SRSPLNVARE DEETIQAALD YVEAKGGNSD WTVKLGINLS YSAILSRSPL  2160
YSKQMPYNSV IYNAFGRSSP ATSSPSKPEV SGIRSSRQRK YVVGKWCGKV WMSHQVHPFL  2220
LEQDLEGEES KRSCHLRAAM DEDFTGKRLF PSRGATTMFG RTYSRKRNIR AKAVPRKKLT  2280
SFKREDGDSD DTSEDHSYKQ QWRASGNEEE TYFGTGITAS GDSSNQMSDQ QIKGIRRHRG  2340
LKEFESDDEV SNRSLGEEYT VREHAISESS TEKSFQLYQQ SIDRNAYEDS VYGHDDGNVY  2400
RHLRGIPKSK RTKVFRNPVS YDSEDNDVHQ QKGNRQVSRR IGGEYDSAED SVEEQDFCIT  2460
GKRQTTSTAK RKVKNEIVQS PRETNEEFNP CMEGPSTRLR VRIPKPSRGT LETKPKKIGK  2520
RRNSNASFSR VASEEDVDED VEEEEECAAY KCDMEGCTMS FSTEKQLALH KRNICPIKGC  2580
GKNLFSHKYL VQHQRVHSDD RPLKCPWKGC KMTFKWSWSR TEHVRVHTGA RPYICAEPGC  2640
DQTFRFVSDF SRHKRKTGHS VKKTKKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fwj_A3e-431815767351HISTONE DEMETHYLASE JARID1C
5fwj_B3e-431815767351HISTONE DEMETHYLASE JARID1C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110321044KRKVRAKAVPRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6644990.0AY664499.1 Arabidopsis thaliana relative of early flowering 6 (REF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426332.10.0PREDICTED: lysine-specific demethylase REF6-like isoform X1
SwissprotQ9STM30.0REF6_ARATH; Lysine-specific demethylase REF6
TrEMBLR0FN140.0R0FN14_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.5__1196__AT3G48430.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6